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aln_bis_20141120
aln_bis_20141218
aln_bis_20150310
aln_bis_20150310_XZ69-XZ81
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aln_bis_20150505
aln_bis_20150505_XZ13-XZ15
aln_bis_20160328
aln_bis_gr_2014
aln_bis_stat
aln_bwa_20141120
aln_bwa_20150107
aln_bwa_20150505
aln_bwa_XZ69
aln_bwa_gr_2014
aln_bwa_gr_2014_samtools
aln_bwa_mer
aln_bwa_mer_0g
bed_file_ana_sites_4CK
bed_file_ana_sites_CK
bed_file_ana_sites_OTOB
bed_file_forIGV
bed_file_for_methpipe
bed_file_for_methpipe_GR
bed_file_merge_OTOB
bed_file_tem
bs-seq_DMR_identify_ctrl
bs-seq_DMR_methpipe
bs-seq_DMR_methpipe_GR
bs-seq_DMR_methpipe_bak
bs-seq_DMR_methpipe_test
bs-seq_DMS_identify
bs-seq_DMS_identify_7g
bs-seq_DMS_identify_ctrl
bs-seq_DMS_identify_gr
bs-seq_DMS_identify_heatmap
bs-seq_DMS_identify_heatmap_CK
bs-seq_winDMR
call_var_VarScan2
call_var_VarScan2_5sam
call_var_VarScan2_bak
call_var_gatk_BR
call_var_retroseq
call_var_samtools
determine_the_right_ancestor
doc
gr_2014_aln_bwa_varscan2
gr_2014_call_var_retroseq
problem_XZ
raw_data
raw_data_bs-seq
stat_chro_mito_num
test
README.md
gener_cmd_stat_func_class.pl

README.md

DMS number and epimutation rate

R --vanilla --slave < stat_DMS_rate_4geno.R
R --vanilla --slave < run_step3_merge_anno.R
R --vanilla --slave < gener_mer_figure_epi_num_rate.R
./bs-seq_DMS_identify_ctrl/stat_DMS_num/fig_dms_num_rate_4geno.pdf